Changes between Version 3 and Version 4 of SchematicOverview

Timestamp:

Sep 25, 2010 6:59:04 AM (14 years ago)

Author:

Morris Swertz

Comment:

--

SchematicOverview

@@ -10 +10 @@
 #!graphviz
 digraph G {
-BGI->FASTQ->"SNP and indel calling"->VCF
-FASTQ->"de novo variant discovery and verification"
-BGI->VCF->"Chip QC"->"Qced Genotypes"
-ImmunoChip->"Chip QC"
-VCF->"Mendelian QC"->"Qced Genotypes"
-"Qced Genotypes"->"Call improvement and phasing"->"Improved and phased genotypes"->Imputations
-"Improved and phased genotypes"->"Population genetics"
-"Improved and phased genotypes"->"Functional variants"
-"Improved and phased genotypes"->"Novel variant discovery and verification"
-FASTQ->"Novel variant discovery and verification"
+ranksep=.75; size = "10,7.5";
+
+node[shape=folder]
+"Biobanks"
+"Sequence Reads (FASTQ)"
+"Qced Genotypes (VCF)"
+"Coverage report"
+"Improved and phased genotypes"
+"GWAS control cohorts"
+"Imputed GWAS control cohorts"
+"Dutch HapMap"
+
+node[shape=diamond, style=filled, fillcolor=yellow]
+
+Biobanks->BGI->"Sequence Reads (FASTQ)"->"Alignment"->"SNP and indel calling"->"Chip QC"->"Mendelian QC"->"Qced Genotypes (VCF)"
+"Alignment"->"Coverage analysis"->"Coverage report"
+BGI->"Chip QC"
+Biobanks->ImmunoChip->"Chip QC"
+"Qced Genotypes (VCF)"->"Call improvement and phasing"->"Improved and phased genotypes"->Imputations
+Biobanks->"GWAS control cohorts"->Imputations->"Imputed GWAS control cohorts"
+"Improved and phased genotypes"->"Population genetics"->"Dutch HapMap"
+"Improved and phased genotypes"->"Functional variants"->"Dutch HapMap"
+"Improved and phased genotypes"->"Novel variant discovery and verification"->"Dutch HapMap"
+"Sequence Reads (FASTQ)"->"Novel variant discovery and verification"
+"Qced Genotypes (VCF)"->TrioAwarePhasing -> "Improved and phased genotypes"
+
 }
 }}}