Changes between Initial Version and Version 1 of BIOS_BBMRI-omics_course

Timestamp:

Mar 22, 2017 11:14:07 AM (9 years ago)

Author:

rick

Comment:

--

BIOS_BBMRI-omics_course

@@ +1 @@
+ ==BBMRI omics Hands-on Course===
+
+date: March 31, 2017
+Location: SURFsara, Utrech 
+url: https://www.bbmri.nl/event/bbmri-omics-introduction-and-hands-on-application/===
+
+==Program==:
+
+10:00-10:30 Introduction to available omics data within BBMRI-omics.nl. Description of RNA-seq, 450k methylation, metabolomics, imputed genotypes, phenotypes and technical covariates. Data location and access. (Rick Jansen)
+
+10.30-11.15: Introduction to R package BIOSRutils. How to use BIOSRutils for filtering and QC, and finally run EWAS and TWAS (Maarten van Iterson)
+
+11.15-12.15: Practicum (Maarten van Iterson) 
+
+12.15-13.15: Lunch (demo: using BBMRI-Omics.nl online atlases (Jan-Bert van Klinken))
+
+13.15-13.45: Joost Verlouw: QTL lookup of GWAS hits. Take the SNP hits from a recent GWAS, extract corresponding BIOS genotype data, run association with full Methylation, Expression and Metabolomics data sets.
+
+13.45-14.45: Practicum (Joost Verlouw)
+
+14.45-15.15- Tea break
+
+15:15-15:45: Introduction to the Brainshake 1H-NMR metabolomics platform (Marian Beekman)
+
+15:45-16.30: Practicum. Analyzing Metabolomics data (Koen Dekker)
+
+16:30-17:00: Allele specific expression (Niek de Klein/Freerk van Dijk)
+17:00-17:45: Practicum (Niek de Klein/Freerk van Dijk))
+
+18:00 Drinks
+
+==Practicum guidelines and exercises==
+