| | 1 | = Grid Data Infrastructure = |
| | 2 | |
| | 3 | Check out first [wiki:FgPreparedData Recommended BIOS datasets for downstream analysis] - One page overview of all prepared BIOS datasets (not raw data) |
| | 4 | |
| | 5 | == Power users == |
| | 6 | All decision on infrastructure are confirmed with and agreed by the following power users |
| | 7 | * RNA-seq: 't Hoen and Franke |
| | 8 | * 450k methylation: Franke and Heijmans |
| | 9 | * Phenotypes: Franke and Heijmans |
| | 10 | * Genotypes: Franke and Heijmans |
| | 11 | |
| | 12 | == Infrastructure and access == |
| | 13 | * [wiki:FgObtainingGridAccess Obtaining access] - Obtaining access to the grid infrastructure. |
| | 14 | * [wiki:FgSRMFileStructure SRM file system structure] - Specifying the policy of SRM and where to store your files. |
| | 15 | * [wiki:FgFileBackups Information about file backups on SRM] - Specifying which files need to be backed up and where. |
| | 16 | * [wiki:FgEGA Using EGA to archive datasets] - How to upload BIOS data to EGA |
| | 17 | |
| | 18 | == Experimental raw data protocols == |
| | 19 | Here are specification of location of raw BIOS data and their file format. |
| | 20 | * [wiki:FgRnaSeq RNASeq data] - Protocols concerning raw RNASeq data. |
| | 21 | * [wiki:FgMethylation Methylation data] - Protocols concerning raw methylation data. |
| | 22 | * [wiki:FgGenotype Genotype data] - Protocols concerning raw genotype data. |
| | 23 | * [wiki:FgPhenotype Phenotype data] - Protocols concerning raw phenotype data. |
| | 24 | |
| | 25 | == Reference and testing data == |
| | 26 | * [wiki:FgReferenceFiles Reference and annotation] - Location and descriptions. |
