Changes between Version 23 and Version 24 of BigCompute


Ignore:
Timestamp:
Dec 20, 2010 12:04:27 PM (13 years ago)
Author:
Barbera van Schaik
Comment:

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Legend:

Unmodified
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  • BigCompute

    v23 v24  
    6363''' On mini pilot. Split lines-per-file: 8,000,000. Start: 18-12-2010 16:40 '''
    6464|| '''Lane''' || '''split BWA merge''' || '''Comments''' || '''Elapsed time (s)''' ||
    65 || A4a_L4_HUModqRBUDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-cOunUZ/html/workflow-cOunUZ.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100826_I176_FC804GCABXX_L6_HUModqRBUDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRBUDIBAPE_L4/mergebam || 22740 ||
    66 || A4a_L6_HUModqRADDIAAPE  || [https://hangplek.nikhef.nl:443/workflows/workflow-pqWdc1/html/workflow-pqWdc1.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100826_I124_FC20813ABXX_L7_HUModqRADDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRADDIAAPE_L6/mergebam || 37750 ||
     65|| A4a_L4_HUModqRBUDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-cOunUZ/html/workflow-cOunUZ.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100826_I176_FC804GCABXX_L6_HUModqRBUDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRBUDIBAPE_L4/mergebam lfc] || 22740 ||
     66|| A4a_L6_HUModqRADDIAAPE  || [https://hangplek.nikhef.nl:443/workflows/workflow-pqWdc1/html/workflow-pqWdc1.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100826_I124_FC20813ABXX_L7_HUModqRADDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRADDIAAPE_L6/mergebam lfc] || 37750 ||
    6767|| A4a_L7_HUModqRBVDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-OqeNdv/html/workflow-OqeNdv.html failed] || || ||
    68 || A4b_L3_HUModqRAFDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-GRDX0X/html/workflow-GRDX0X.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100829_I168_FC804GBABXX_L1_HUModqRAFDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4b_HUModqRAFDIBAPE_L3/mergebam || 32256 ||
     68|| A4b_L3_HUModqRAFDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-GRDX0X/html/workflow-GRDX0X.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100829_I168_FC804GBABXX_L1_HUModqRAFDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4b_HUModqRAFDIBAPE_L3/mergebam lfc] || 32256 ||
    6969|| A4b_L6_HUModqRBTDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-ZRH98o/html/workflow-ZRH98o.html failed] || || ||
    7070|| R2A _L1_HUModqRADDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-1lNDQh/html/workflow-1lNDQh.html failed] || || ||
    71 || R2A _L1_HUModqRAFDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-rufel6/html/workflow-rufel6.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100809_I125_FC2083DABXX_L1_HUModqRAFDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2A_HUModqRAFDIBAPE_L1/mergebam || 35819 ||
     71|| R2A _L1_HUModqRAFDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-rufel6/html/workflow-rufel6.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100809_I125_FC2083DABXX_L1_HUModqRAFDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2A_HUModqRAFDIBAPE_L1/mergebam lfc] || 35819 ||
    7272|| R2A _L5_HUModqRAEDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-wVuMjg/html/workflow-wVuMjg.html failed] || || ||
    73 || R2B _L3_HUModqRBTDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-L3m5Yi/html/workflow-L3m5Yi.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100809_I174_FC2085PABXX_L6_HUModqRBTDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2B_HUModqRBTDIAAPE_L3/mergebam || 23754 ||
     73|| R2B _L3_HUModqRBTDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-L3m5Yi/html/workflow-L3m5Yi.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100809_I174_FC2085PABXX_L6_HUModqRBTDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2B_HUModqRBTDIAAPE_L3/mergebam lfc] || 23754 ||
    7474|| R2B _L4_HUModqRBUDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-alGMJK/html/workflow-alGMJK.html failed] || pair 1 not in correct gzip format? || ||
    7575|| R2B _L6_HUModqRBTDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-LCaDkY/html/workflow-LCaDkY.html failed] || || ||
    76 || R2C _L2_HUModqRBUDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-gVXW9i/html/workflow-gVXW9i.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100810_I171_FC20828ABXX_L3_HUModqRBUDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2C_HUModqRBUDIBAPE_L2/mergebam || 40763 ||
     76|| R2C _L2_HUModqRBUDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-gVXW9i/html/workflow-gVXW9i.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100810_I171_FC20828ABXX_L3_HUModqRBUDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2C_HUModqRBUDIBAPE_L2/mergebam lfc] || 40763 ||
    7777|| R2C _L2_HUModqRBVDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-8bma4j/html/workflow-8bma4j.html failed] || || ||
    78 || R2C _L7_HUModqRBVDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-Rjh1lC/html/workflow-Rjh1lC.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100810_I128_FC2087PABXX_L7_HUModqRBVDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2C_HUModqRBVDIAAPE_L7/mergebam || 39374 ||
    79 || Unknown_L6_HUModqRBUDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-IG0HAm/html/workflow-IG0HAm.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100804_I124_FC201RNABXX_L6_HUModqRBUDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/Unknown_HUModqRBUDIAAPE_L6/mergebam || 30307 ||
     78|| R2C _L7_HUModqRBVDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-Rjh1lC/html/workflow-Rjh1lC.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100810_I128_FC2087PABXX_L7_HUModqRBVDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2C_HUModqRBVDIAAPE_L7/mergebam lfc] || 39374 ||
     79|| Unknown_L6_HUModqRBUDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-IG0HAm/html/workflow-IG0HAm.html done] || [lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100804_I124_FC201RNABXX_L6_HUModqRBUDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/Unknown_HUModqRBUDIAAPE_L6/mergebam lfc] || 30307 ||
    8080
    8181''' BWA alignment on mini pilot without splitting the data '''