Changes between Version 1 and Version 2 of DataConcordance


Ignore:
Timestamp:
Feb 4, 2011 3:45:59 PM (11 years ago)
Author:
Patrick Deelen
Comment:

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  • DataConcordance

    v1 v2  
    33Tool to compare sequence data with data from genotyping chips.
    44
    5 == Features ==
     5= Features =
    66 * Overview of concordance per sample
    77 * Matrix of all sequence samples vs all genotype samples
     
    99 * Performance per SNP
    1010
    11 == Future ==
     11= Input =
     12The genotype data input is currently PED/MAP as generated by [http://pngu.mgh.harvard.edu/~purcell/plink/ plink].
     13
     14Both QCed as non QCed data is supported. The following sequence file formates are supported
     15
     16 * VCF
     17 * Q20
     18 * CNS
     19
     20= Future =
    1221 * Plots to give more insight in SNP performance