Changes between Version 2 and Version 3 of DataManagement


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Timestamp:
Feb 8, 2011 3:51:56 PM (11 years ago)
Author:
laurent
Comment:

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  • DataManagement

    v2 v3  
    5050 * Lane-level files should be named using: ''step_id.step_name.sample_name.lane_name.genome_build.time_stamp.extension''
    5151   * Ex: A bam file for the lane FC20005_L1 of the sample A2a produced by the step pe03 (step 3 of paired-end alignment) with the tool BWA sampe using genome build human_g1k_v37 on a  run that begun on February 1st 2011 at 12:00 should be named: ''pe03.bwa_sampe.A2a.FC20005_L1.human_g1k_v37.2011_02_12_00.bam''
    52  * Log file names should correspond to their output counterparts and have the .log extension. 
     52 * Log file names should correspond to their output counterparts and have the .log extension.
    5353   * Ex: log file for the vcf sample-level step above should be: ''vc02.unified_genotyper.A2a.human_g1k_v37.2011_02_01_12_00.log''
    5454   * Ex: log file for the bam lane-level step above should be: ''pe03.bwa_sampe.A2a.FC20005_L1.human_g1k_v37.2011_02_12_00.log''
     
    6565
    6666=== Molgenis ===
    67 The Molgenis
     67The Molgenis platform will be used to provide a more advanced and general view of the status of the pipeline runs (including different views, sorting, etc.) The current status is:
     68
     69 * Molgenis instance created with proposed model
     70 * Scripts for insertion under development