Changes between Version 9 and Version 10 of Impute2Pipeline


Ignore:
Timestamp:
Apr 25, 2013 6:04:33 PM (8 years ago)
Author:
Morris Swertz
Comment:

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  • Impute2Pipeline

    v9 v10  
    11= Impute2 pipeline =
    2 [[br]]
    3 This page describes the Impute2 pipeline developed by the GoNL - Impute team. The pipeline performs the following steps:
     2[[TOC()]]
     3This page describes the Impute2 pipeline developed by the GoNL - Impute team.
     4
     5== Overview ==
     6The pipeline performs the following steps:
    47* Pre-processing of study data
    58 1. Liftover PED/MAP files from build 36 to build 37
     
    1114
    1215All analysis jobs are generated using [http://www.molgenis.org/wiki/ComputeStart MOLGENIS Compute], more information about MOLGENIS Compute and the other analysis pipelines can be found here: https://github.com/molgenis/molgenis-pipelines
    13  [[br]]
    14  [[br]]
     16
     17== Paper ready summary ==
     18
     19TODO.
     20
    1521== Reference data ==
    1622 * ALL_1000G_phase1integrated_v3_impute.tgz from the impute website, this dataset contains 1,092 individuals
    1723 * GoNL release 4, 499 unrelated individuals, 998 haplotypes
    18  [[br]]
    19  [[br]]
     24
    2025== Pre processing of study data ==
    2126 === Liftover PED/MAP files from build 36 to build 37 ===