[[TOC()]] = Trio aware phasing = In this project, we will establish an infrastructure and perform phasing of the sequence data. == Summary == '''Status''': under development '''Contributors''': Yurii, Lennart, TBA '''Timeline''': January 2011 – April 2011 (phased genotypes using already existing solutions) - July 2011 (phased genotypes using own solution) - December 2011 (release of software) '''Resources''': !PostDoc at 1.0 fte + BI/programmer at 0.5 fte (ideally, the same as the one on MendelianQcPipeline) + experienced supervisor at 0.1 fte '''Depends on''': availability of QC'ed VCF data (ChipBasedQcPipeline and MendelianQcPipeline) '''Other projects depending on this''': imputations / ImputationPipeline (hard), population genetics (LD, hard), functional variants / SnpAnnotationPipeline (final catalogue, soft), novel variants discovery (final catalogue, soft). == Aims and Deliverables == * In concert with developments from MendelianQcPipeline, improve quality of sequence genotypes data by fixing errors and filling in missing values * Higher-quality, more complete and phased genotypes == Idea == A principal idea of what questions should be addressed (without saying how) is summarized in TrioAwarePhasingPipelineIdea. == Workflow == Automated workflow (will be) provided in TrioAwarePhasingPipelineWorkflow page.